I am a M.S.E Student in Department of Biomedical Engineering, Whiting School of Engineering, Johns Hopkins University, advised by Prof. Hongkai Ji and Dr. Weiqiang Zhou. My primary research interests are in the application of computing (AI, DS and VIS) to problems relevant to biomedicine. I have published some papers . If you are seeking any form of academic cooperation, please email me at xchen279(at)jhu.edu.

I graduated from School of Computer and Electronic Information/School of Artificial Intelligence, Nanjing Normal University with a bachelor’s degree, advised by Yanhui Gu. I also collaborate with Richen Liu and Weihua Pan from Chinese Academy of Agricultural Sciences closely.

🔥 News

• 2023.10: 🎉 One paper (MapLE) is accepted by AAAI2024.
• 2023.06: 🎉 One paper (GFAP) is accepted by Plant Physiology.

📚 Publications

Plant Physiology

GFAP: Ultra-fast and Accurate Gene Functional Annotation Software for Plants
Dong Xu, Yingxue Yang, Desheng Gong, Xiaojian Chen, Kangming Jin, Heling Jiang, Wenjuan Yu, Jihong Li, Jin Zhang, Weihua Pan.

Project |

📕 Journals

• comp+bio GFAP: Ultra-fast and Accurate Gene Functional Annotation Software for Plants Dong Xu, Yingxue Yang, Desheng Gong, Xiaojian Chen, Kangming Jin, Heling Jiang, Wenjuan Yu, Jihong Li, Jin Zhang, Weihua Pan. Plant Physiology, 193(3): 1745-1748, 2023.

• SciVIS Interactive Geological Data Visualization in an Immersive Environment Xiaojian Chen, Hailong Wang, Yu Zhu, Hansheng Wang, Mingjun Su, Shuyu Bao, Yiping Wu. International Journal of Geo-Information, 11(3):176, 2022.

• SciVIS Narrative Scientific Data Visualization in an Immersive Environment Richen Liu, Hailong Wang, Chuyu Zhang, Xiaojian Chen, Lijun Wang, Genlin Ji, Bin Zhao, Zhiwei Mao, Dan Yang. Bioinformatics, 37(14):2033-2041, 2021.

• SciVIS Multiuser Collaborative Illustration and Visualization for Volumetric Scientific Data Richen Liu, Xiaodong Wen, Meng Jiang, Guang Yang, Chuyu Zhang, Xiaojian Chen. Software: Practice and Experience, 51(5):1080-1096, 2021.

📘 Conferences

• comp+bio MapLE: Matching Molecular Analogues Promptly with Low Computational Resources by Multi-metrics Evaluation Xiaojian Chen, Chuyue Liao, Yanhui Gu, Yafei Li, Jinlan Wang, Yi Chen, Masaru Kitsuregawa. AAAI, 2024.

• SciVIS iTDW: Immersive Tiled Display Wall with Clustering-Driven Layout Hansheng Wang, Xiaojian Chen, Zeyu Xia, Hailong Wang, Xiaohan Wang, Richen Liu. ISMAR, 2022.

• SciVIS Visualization Transfer from 2D Image to 3D Volume Dan Yang, Zhiwei Mao, Xiaojian Chen, Siru Chen, Xiaodong Wen, Meng Jiang, Yiping Wu. PaciVIS, 2021.

• SciVIS Multi-user Collaborative Volume Data Illustration and Visualization Chuyu Zhang, Xiaojian Chen, Yu Zhu, Xiaohan Wang, Siru Chen, Xiaodong Wen, Richen Liu. VIS, 2020.

📔 Patents

• comp+bio Ligand docking gesture virtual screening method based on quick retrieval Xiaojian Chen, Yanhui Gu, Chang Liu, Xianfeng Zhang, Haohui Xia, Yang Li, Yafei Li, Jinlan Wang. CN116246696A, 2023.

• comp+bio Prediction method of docking posture between protein and ligand based on graphic neural network Yanhui Gu, Xiaojian Chen, Xianfeng Zhang, Yuansu Hao, Yuxin Wen, Chuyue Liao. CN116343910A, 2023.

• SciVIS Immersive virtual large screen construction method based on cluster driving Xiaojian Chen, Richen Liu, Hansheng Wang, Hailong Wang, Zeyu Xia, Yu Zhu, Jiaqi Xu, Xiaohan Wang, Siyu Yan, Xiaojun Qian. CN115934014A, 2023.

• SciVIS Medical data visualization method based on histogram and nonlinear embedded transfer function Yu Zhu, Richen Liu, Xinru Li, Shuyu Bao, Xiaojian Chen, Guodong Chen, Rongxin Cang, Xiaohan Wang, Siyu Yan, Xiaojun Qian. CN116206735A, 2023.

🏆 Honors and Awards

• 2023.06 Excellent Graduated Student of Nanjing Normal University
• 2022.10 National Scholarship (Undergraduate) (Top 1%)
• 2021.04 Best Poster Award at PacificVIS 2021

📖 Educations

• 2023.08 - Now, Master, Johns Hopkins University, Baltimore.
• 2019.09 - 2023.06, Undergraduate, Nanjing Normal Univeristy, China.

📝 Teaching Assistant

• Fall, 2023, EN.580.487 Computational Medicine: Cardiology Laboratory, Johns Hopkins University
• Fall, 2022, C Programming Language Course, Nanjing Normal University
• Fall, 2022, Database Principle and Application Course, Nanjing Normal University
• Fall, 2021, C Programming Language Course, Nanjing Normal University

💻 Internships

• 2022.06 - 2023.06, CAAS, AGIS, Weihua Pan Lab, Beijing.
• 2022.01 - 2022.05, Beijing NSTC, Beijing.

Last updated: 2024-03-30